Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs13343502 chr19:37962292 C/T 1.76E-13 133 45.47 36.12 17.1 KM Plot
TGCT rs13357047 chr5:88210655 A/G 7.84E-7 134 0.57 69.63 41.97 KM Plot
TGCT rs13387476 chr2:54762985 C/T 0.000156 131 46.3 46.3 18.57 KM Plot
TGCT rs1359537 chr13:79213552 C/T 9.12E-5 127 45.1 25.77 87.03 KM Plot
TGCT rs138157795 chr7:156580637 A/C 0.000126 129 44.05 68.97 32.85 KM Plot
TGCT rs138192317 chr10:27588549 G/A 0 127 42.18 45.83 18.85 KM Plot
TGCT rs138354053 chr14:78184281 T/TC 7.4E-5 134 45.1 39.38 18.07 KM Plot
TGCT rs1385374 chr12:129300694 C/T 1.39E-5 134 41.33 44.28 29.53 KM Plot
TGCT rs138675549 chr16:74207299 AAATT/A 0.000167 128 46.3 36.97 57.87 KM Plot
TGCT rs138896076 chr6:8400325 TA/TAA 0.000127 131 42.1 46.3 17.1 KM Plot
TGCT rs138946835 chr8:116906250 CATA/C 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs139277547 chr10:27589507 G/A 0 127 42.18 45.83 18.85 KM Plot
TGCT rs139301947 chr16:67584362 C/G 0 133 46.07 24.1 0.57 KM Plot
TGCT rs139554544 chr6:15223291 A/G 7.25E-5 131 37.62 45.1 NA KM Plot
TGCT rs139602953 chr20:58139972 GAGAC/G 2.79E-13 131 39.38 79.62 17.1 KM Plot